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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6722612 chr2:113016736 T/C RGPD5 chr2:110550335-110615272:+ -0.49 -7.13 3.85E-12 Box Plot
THCA rs6722896 chr2:101122881 T/C LOC285359 chr3:101431278-101432259:+ 0.3 6.05 2.9E-9 Box Plot
THCA rs6723261 chr2:101093345 A/G LOC285359 chr3:101431278-101432259:+ 0.31 6.25 8.93E-10 Box Plot
THCA rs672356 chr17:18266567 G/A LOC162632 chr17:16614993-16707819:+ 0.43 6.82 2.8E-11 Box Plot
THCA rs67240003 chr6:27443202 G/T BTN3A2 chr6:26365387-26378548:+ -0.66 -10.55 1.62E-23 Box Plot
THCA rs67240003 chr6:27443202 G/T ZFP57 chr6:29640169-29648887:- 0.67 7.21 2.19E-12 Box Plot
THCA rs6724844 chr2:132242452 C/T TUBA3E chr2:130949316-130956034:- 0.54 6.28 7.78E-10 Box Plot
THCA rs6726082 chr2:101093111 T/C LOC285359 chr3:101431278-101432259:+ 0.33 6.45 2.7E-10 Box Plot
THCA rs6726169 chr2:113246011 A/G RGPD5 chr2:110550335-110615272:+ 0.5 7.36 8.19E-13 Box Plot
THCA rs6726587 chr2:101093556 T/C LOC285359 chr3:101431278-101432259:+ 0.36 6.91 1.51E-11 Box Plot
THCA rs67282440 chr2:132192766 A/G CCDC74B chr2:130896860-130902707:- 0.37 6.57 1.29E-10 Box Plot
THCA rs6728833 chr2:101169964 T/C LOC285359 chr3:101431278-101432259:+ 0.38 7.35 8.81E-13 Box Plot
THCA rs6728834 chr2:101170162 A/G LOC285359 chr3:101431278-101432259:+ 0.38 7.35 8.81E-13 Box Plot
THCA rs67293838 chr2:144156927 CA/C ZNF296 chr19:45574758-45579846:- 0.25 5.93 5.87E-9 Box Plot
THCA rs6729578 chr2:132265747 C/A CCDC74B chr2:130896860-130902707:- 0.41 7.36 8.07E-13 Box Plot